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Home News Anthropology

Medieval bone study identifies microbial communities driving archaeological bone degradation and preservation

by Dario Radley
May 28, 2026

Human bones buried for centuries carry more than traces of the people they once belonged to. They also hold microbial communities linked to decay and preservation. A new study from Norway examined those hidden populations and found clear differences between well-preserved bones and heavily degraded ones.

Medieval bone study identifies microbial communities driving archaeological bone degradation and preservation
Skeletons exposed during a research excavation in a medieval cemetery in Stavanger, Norway. Credit: The Museum of Archaeology, University of Stavanger, CC-BY 4.0

Researchers studied human bone samples from medieval cemeteries and churches in southwestern Norway. The remains dated from the 11th to the 19th centuries. Some individuals had been buried outdoors in cemeteries. Others rested beneath church floors. Burial setting mattered. Older bones and outdoor burials often showed stronger signs of damage. Indoor burials tended to survive in better condition.

Scientists have linked microorganisms to archaeological bone decay since the 1800s. Even so, the process still raises many questions. Researchers still struggle to identify which microbes damage buried bones and how those organisms shape long-term preservation.

The Norwegian team brought together two lines of evidence. They examined microscopic damage inside the bones and compared those patterns with genetic data from microbial DNA preserved in the same samples. Few studies have combined these approaches on such a large group of archaeological remains.

Medieval bone study identifies microbial communities driving archaeological bone degradation and preservation
A section of a human femur under the microscope. The upper, outer half displays bioerosion, the tunneling by bone-eating microorganisms, while the lower half is well-preserved, showing the microanatomy of the bone. Credit: Hege Ingjerd Hollund, CC-BY 4.0

The findings showed a close relationship between preservation state and microbial makeup. Bones with different levels of degradation carried different microbial communities. One bacterial group appeared again and again across the material. Streptomyces turned up in most samples, supporting earlier work linking this genus to bone bioerosion during burial.

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Other bacterial groups appeared in patterns tied to preservation level. Lysobacter showed links with moderately degraded bones. Streptosporangium appeared in several samples as well. Some members of these bacterial groups produce enzymes that break down collagen, one of bone’s main structural proteins. This connection places them among possible drivers of long-term skeletal decay.

One result stood out. Well-preserved bones often contained higher microbial diversity than badly degraded ones. The pattern appeared strongest in indoor burials beneath church floors. Researchers suggest a simple explanation. Better-preserved bones retain more internal structures and nutrients. Those conditions support a wider range of microbes without destroying the bone itself.

Medieval bone study identifies microbial communities driving archaeological bone degradation and preservation
Excavation in a medieval cemetery in Stavanger, Norway. Credit: The Museum of Archaeology, University of Stavanger., CC-BY 4.0

The team also looked for fungal activity. Microscopic analysis showed structures consistent with fungi in some samples. Genetic testing told a different story. Fungal DNA appeared in only one sample. The data do not provide a clear answer about fungi and their role in bone degradation.

Ancient DNA research brings technical limits. Genetic material breaks down over time, which reduced the study’s ability to identify microbes at the species level. The researchers also pointed to another issue. Excavation, handling, and long-term storage introduce contamination risks. Some microbial traces found in archaeological collections may come from later contact rather than burial conditions.

Even with those limits, the study adds new detail to an old archaeological problem. The findings support the idea of a distinct microbial community associated with curated skeletal collections, sometimes called a museum bone microbiome. The repeated presence of Streptomyces strengthens suspicion around its role in bone decay after burial.

Future work from other regions and burial settings will help test whether these patterns hold across different environments. For archaeologists and forensic researchers, microbial signatures inside ancient bones offer another way to study what happens after burial. Human remains do not change in silence. Microbial activity continues for centuries, leaving traces inside the bone itself.

More information: Kaptan, D., Flemming Elvers, A. C., Kjær Knudsen, A., Schroeder, H., & Hollund, H. I. (2026). Histological and metagenomic analysis of microbial communities in archaeological human bones. PloS One, 21(5), e0340244. doi:10.1371/journal.pone.0340244

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